Installation

PyPI

PAST is available on PyPI here and can be installed via:

pip install bio-past

GitHub

PAST can also installed from GitHub via:

git clone https://github.com/lizhen18THU/PAST.git
cd PAST
python setup.py install

Dependency

numba
numpy
pandas
scipy
scikit-learn
scanpy
torch

These dependencies will be automatically installed along with PAST. To implement the mclust algorithm with python, the rpy2 package and the mclust package is needed. See rpy2 and mclust for detail.