past.Utils.StDataset

class past.Utils.StDataset(data, knn, metric)

Spatial Transcriptomic Dataset

Parameters:

  • data – gene expression of the dataset

  • knn – K-NN graph constructed according the spatial coordinate of dataset

  • metric – spatial prior graph constructed according the spatial coordinate of dataset

__init__(data, knn, metric)

Methods

__init__(data, knn, metric)

get_batch(index)

Get a batch of data according to given index