past.Utils.visualize

past.Utils.visualize(adata, keys, use_rep='embedding', library_id=None, spot_size=None, plot_spatial=True)

visualization for cell embedding and spatial clustering

Parameters:

• adata – target dataset of anndata format

• keys – keys to visualize stored in adata.obs

• use_rep – embedding storing in adata.obsm for visualizing

• library_id – visualize spatial clustering on top of tissue histology, specific to 10X Visium

• spot_size – spot size for spatial clustering visualization

• plot_spatial – whether or not to visualize spatial clustering