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Installation
Tutorial 1: Analysis of osmFISH MSC data
Tutorial 2: Analysis of 10X Visium DLPFC data
Tutorial 3: Analysis of STARmap MPVC data
Tutorial 4: Analysis of large-scale Stereo-seq MOBS1 data
Tutorial 5: Annotation of 10X Visium Breast Cancer data
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Index
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C
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D
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G
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I
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L
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M
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P
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R
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_
__init__() (past.Model.PAST method)
(past.Utils.StDataset method)
C
cluster_metrics() (in module past.Evaluation)
cluster_refine() (in module past.Evaluation)
D
default_leiden() (in module past.Evaluation)
default_louvain() (in module past.Evaluation)
DLPFC_split() (in module past.Utils)
G
geary_genes() (in module past.Utils)
get_bulk() (in module past.Utils)
I
integration() (in module past.Utils)
L
load_noise() (in module past.Utils)
M
mclust_R() (in module past.Evaluation)
module
past
O
optim_parameters() (in module past.Utils)
P
past
module
PAST (class in past.Model)
preprocess() (in module past.Utils)
R
Ripplewalk_prediction() (in module past.Utils)
Ripplewalk_sampler() (in module past.Utils)
run_leiden() (in module past.Evaluation)
run_louvain() (in module past.Evaluation)
S
setup_seed() (in module past.Utils)
spatial_prior_graph() (in module past.Utils)
StDataset (class in past.Utils)
svm_annotation() (in module past.Utils)
svm_cross_validation() (in module past.Evaluation)
V
visualize() (in module past.Utils)
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